SE3050507

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_644
  • Malus domestica
  • SE3050507
  • PIF/harbinger
  • MadP6
  • MDC002541.208:504-827
  • TTA
  • AGGGTGCGTTTGGTACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 CAGACAGGAC                            A  GGA  GAAC   - -    AC GGACGGGACGGAACGAAGGTGTAATTTTTGAAAAAGACATGGGGTATATTTGTCTTAAAATGGTAAAACATTGTGTTCCACAGACGTG
  AGGGTGCGTTTGGTACG          GGGACGGGACGGGACGGAACGGGACGGG CG   CG    GGG A CGGG  G                                                                                        
  |||||||||||||||||          |||||||||||||||||||||||||||| ||   ||    ||| | ||||  |                                                                                         
  TCCCACGCAAACCATGC          CCCTGCCCTGCCCTGCCTTGCCCTGCTC GC   GC    GGG G AAAC  C                                                                                        
AT                 ---------A                            C  AAG  ---A   C C    -- ACGCGGTTTTTACCCACCTTGCCCGACAAGGTGCCCTGTCTAAAACCCACAAAAACGCAAGGTGGAGGGGGGACCTTGCCCAAACAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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