Plant MITE

SE3020508

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_645
Malus domestica
SE3020508
Mutator
MadM12
MDC022695.212:5332-5571
CTTATATAT
TATATATGAACCAGGATCCTCTCCTGAGCAGTTCCCTAGAGATCCTAGGGATCCCGCAATCTTGTCCGTTCATTTTATATCGTGCGGTCA

Secondary structure and sequence

TSD TIR

5'

3'

CT      -T                                AG                   CT            T               ATTTTTGTTAAATACT     TATTTGAATTTT
  TATATA  GAACCAGGATCCTCTCCTGAGCAGTTCCCTAG  ATCCTAGGGATCCCGCAAT  TGTCCGTTCATT TATATCGTGCGGTCA                ATTCA            
  ||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||| |||||||||||||||                |||||             
  ATATAT  CTTGGTCCTAGGAGAGGACTCGTCAAGGGATC  TAGGATTCCTAGGGCGTTA  ACAGGCAAGTAG ATATAGTACGCCAGT                AAATT            
 T      TC                                CA                   AT            C               ----------CTTAAT     TTAAATTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020508

CTTATATATGAACCAGGATCCTCTCCTGAGCAGTTCCCTAGAGATCCTAGGGATCCCGCAATCTTGTCCGTTCATTTTATATCGTGCGGTCAATTTTTGTTAAATACTATTCATATTTGAATTTTAAAATTTAAATTTTAAATAATTCTGACCGCATGATATACGATGAACGGACATAATTGCGGGATCCTTAGGATACCTAGGGAACTGCTCAGGAGAGGATCCTGGTTCCTTATATAT

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