Plant MITE

SE3020510

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_647
Malus domestica
SE3020510
Mutator
MadM11
MDC013407.146:8871-9034
AAAAGTTAG
GGGGTGTGCTATCCACACACCCCTTTTTACTTTTCACACAC

Secondary structure and sequence

TSD TIR

5'

3'

AAAAGTTA        C                          A     CCCTTATTAA   C  T      -   TTCTTCA
        GGGGTGTG TATCCACACACCCCTTTTTACTTTTC CACAC          TTT TG TCGTTG ATC       
        |||||||| |||||||||||||||||||||||||| |||||          ||| || |||||| |||       A
        CCCCACAC ATAGGTGTGTGGGGAAAAATGAAGAG GTGTG          AAA AC GGCAGC TAG       
ATTGAAAA        T                          G     --AAAAAACC   A  C      C   CCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020510

AAAAGTTAGGGGTGTGCTATCCACACACCCCTTTTTACTTTTCACACACCCCTTATTAATTTCTGTTCGTTGATCTTCTTCAATTCATCCGATCCGACGGCCAAAAACCAAAAAAGTGTGGGAGAAGTAAAAAGGGGTGTGTGGATATCACACCCCAAAAGTTA

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