Plant MITE

SE3020515

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_652
Malus domestica
SE3020515
Mutator
MadM101
MDC020015.92:13525-13713
TTTCAACAA
AAGAGAAATGCTAAAGAGACTCTTTTAAATTGAGACT

Secondary structure and sequence

TSD TIR

5'

3'

TTTCAAC         G    A  G   C       -T   G   CTCCW      C    T  TCTTACAATTTA   TTAATTTCCGTGCCTA
       AAGAGAAAT CTAA GA ACT TTTTAAA  TGA ACT     TGAACT TTTG CA            ACG                
       ||||||||| |||| || ||| |||||||  ||| |||     |||||| |||| ||            |||                 
       TTCTCTTTA GATT CT TGA AGAATTT  ATT TGA     ACTTGA AGAC GT            TCG                
AACAACT         A    C  K   T       TC   S   AAAAT      A    T  YAASTACAAAAA   TGTTACGAAATATTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020515

TTTCAACAAGAGAAATGCTAAAGAGACTCTTTTAAATTGAGACTCTCCWTGAACTCTTTGTCATCTTACAATTTAACGTTAATTTCCGTGCCTATATTATAAAGCATTGTGCTAAAAACATSAAYTGTCAGAAAGTTCATAAAAAGTSTTACTTTTAAGATAGTKTCCTTAGAATTTCTCTTTCAACAA

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