SE3050518

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_655
  • Malus domestica
  • SE3050518
  • PIF/harbinger
  • MadP7
  • MDC009974.164:12371-12616
  • TAA
  • AGAGCTCGTTTGGATGTGCTTTTAAAATGACTGAAAGCGTTTTAGAGAAAATATTTTTGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACTT                                           -AGA               T    -    CACTTTAAGTGCTTTCTACAAGAATCACCAGTTATGTGCTTCTCAC
      AGAGCTCGTTTGGATGTGCTTTTAAAATGACTGAAAGCGTTTT    GAAAATATTTTTGAG TCCA AAAG                                              
      |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||| |||| ||||                                               
      TCTCGAGTAAACCTATACGGAAATTTTATTGACTTTCGCGAAA    CTTTTATGAAAACTT TGAT GTAA                                              
TTTAAT                                           AACA               T    A    CCATTTTTACAATCATTTAGGACCTTTTTGTGAATTTCATGAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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