Plant MITE

SE3020519

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_656
Malus domestica
SE3020519
Mutator
MadM102
MDC010747.393:3296-3483
TTTGGTATT
TGGTATTGGAGAAAGTTTGGCTGCTGAAAAAATCAGCAGTAGCTCCTGCTGCTAGCGAATAACGGATGAACACGTGTCCAAGTTGTGATT

Secondary structure and sequence

TSD TIR

5'

3'

TT     TT   GAA       C  C       ATC        CTC               AAC  A    C       C    -TG     AA
  TGGTA  GGA   AGTTTGG TG TGAAAAA   AGCAGTAG   CTGCTGCTAGCGAAT   GG TGAA ACGTGTC AAGT   TGATT  
  |||||  |||   ||||||| || |||||||   ||||||||   |||||||||||||||   || |||| ||||||| ||||   |||||   
  ATCGT  CTT   TCGAACC AC ACTTTTT   TTGTCGTC   GACGACGATCGCTTA   CC ACTT TGCACAG TTCA   ACTAA  
TT     TT   GCC       A  A       -AA        TAA               GTA  C    A       C    TTA     AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020519

TTTGGTATTGGAGAAAGTTTGGCTGCTGAAAAAATCAGCAGTAGCTCCTGCTGCTAGCGAATAACGGATGAACACGTGTCCAAGTTGTGATTAAAAAATCAATTACTTCGACACGTATTCACCCATGATTCGCTAGCAGCAGAATCTGCTGTTAATTTTTCAACAACCAAGCTCCGTTCTTTGCTATT

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