Plant MITE

SE3060521

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_658
Malus domestica
SE3060521
Mim
MadMi1
MDC008914.386:6766-6993
ATATATA
ATATATAGGA

Secondary structure and sequence

TSD TIR

5'

3'

       A   AATC                C         TT     -       CAA          C          C            A   A         TT  GGCA
 ATATAT GGA    TTTAAGGGAAGGGATC CCATTTTTT  GAAAA ATGGGGA   CCTCTTGACT TTAGATTTGG TTTAATGAAATT TGT GTTGAGATT  GT    
 |||||| |||    |||||||||||||||| |||||||||  ||||| |||||||   |||||||||| |||||||||| |||||||||||| ||| |||||||||  ||     
 TATATA TCT    AAATTCCCTTTCCTAG GGTAAAAAG  TTTTT TACCTCT   GGAGAATTGG AATTTAAATT AAATTACTTTAA ACA CAACTCTAA  TA    
A      G   -GGT                T         TT     G       ATG          T          A            G   C         TT  ATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3060521

ATATATAGGAAATCTTTAAGGGAAGGGATCCCCATTTTTTTTGAAAAATGGGGACAACCTCTTGACTCTTAGATTTGGCTTTAATGAAATTATGTAGTTGAGATTTTGTGGCATGTAATTTAATCTCAACCACAGAATTTCATTAAAATTAAATTTAATGGTTAAGAGGGTATCTCCATGTTTTTTTGAAAAATGGTGATCCTTTCCCTTAAATGGTCTGATATATA

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