Plant MITE

SE3020523

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_660
Malus domestica
SE3020523
Mutator
MadM15
MDC025619.11:34690-34905
TTAATAAAA
AAGGAAAGGGATCCTATCCAGATCCCTTCCTCCTAATCCACCAAGTTCGGGGATCAGGCCGTTGAAACTTGATCAAACGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

TTAATAA       G       A   A                     C             -A  CC       C      A        CAAAC   GATCCACTTTAA
       AAGGAAA GGATCCT TCC GATCCCTTCCTCCTAATCCAC AAGTTCGGGGATC  GG  GTTGAAA TTGATC AACGGCTA     AGG            
       ||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||  ||  ||||||| |||||| ||||||||     |||             
       TTCCTTT CCTAGGA AGG CTAGGGAAGGAGGATTAGGTG TTCAGGTTCCTAG  CC  CAACTTT AACTAG TTGCCGAT     TTC            
AAAATAA       A       G   C                     A             GC  AA       A      A        -----   AATAATATTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020523

TTAATAAAAGGAAAGGGATCCTATCCAGATCCCTTCCTCCTAATCCACCAAGTTCGGGGATCAGGCCGTTGAAACTTGATCAAACGGCTACAAACAGGGATCCACTTTAAAAGTTATAATAACTTTAGCCGTTAGATCAAATTTCAACAACCCGGATCCTTGGACTTAGTGGATTAGGAGGAAGGGATCCGGAGAGGATCCATTTCCTTAATAAAA

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