SE3020530

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_667
  • Malus domestica
  • SE3020530
  • Mutator
  • MadM104
  • MDC013645.51:10382-10581
  • TAACTTGTG
  • ACTTGTGGGACATAGATCTTCTCCGGATCTGAGCCTAGGGATCAATAGATCCRAGTMATTGAGATTTGATCAAACGGGTTACAAATAGGGAACCTCCCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  TT  -                      C                       RA  M                    G      ------------A      A
  AC  GT GGGACATAGATCTTCTCCGGAT TGAGCCTAGGGATCAATAGATCC  GT ATTGAGATTTGATCAAACGG TTACAA             TAGGGA 
  ||  || |||||||||||||||||||||| |||||||||||||||||||||||  || |||||||||||||||||||| ||||||             |||||| C
  TG  CA TCCTGTGTTTAGGAGAGGCCTA ACTTGGATCCCTAGTTATCTAGG  CG TAACTTTAAACTAGTTTGTT AATGTT             ATCCCT 
 G  TT  A                      T                       CC  A                    -      AATAATATTGAAA      C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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