SE3020531

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_668
  • Malus domestica
  • SE3020531
  • Mutator
  • MadM4
  • MDC006596.1025:4575-4763
  • TTAATTAAT
  • TTAATTAATGAGTAATGCTAGGGAGACTAAATTTGTAGACTAAATTTTATAAACTAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
         T               G                AA     A           ACATGGAA       A   GATTATTACTTAAACATTGA
 TTAATTAA GAGTAATGCTAGGGA ACTAAATTTGTAGACT  ATTTT TAAACTAAATG        GTTGATG TTG                    
 |||||||| ||||||||||||||| ||||||||||||||||  ||||| |||||||||||        ||||||| |||                    T
 AATTAATT CTCATTACGATCCTT TGATTTAAACATCTGA  TAAAA GTTTGATTTAC        TACACAG TGG                    
T        -               M                -A     C           --------       -   TTATTCTTTACTCGTGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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