SE3020532

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_669
  • Malus domestica
  • SE3020532
  • Mutator
  • MadM25
  • MDC009957.629:2064-2235
  • TTTTTTATA
  • AGGGAACTTTAACGAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTAT      CT    C      -CTCCC   ACTG   ACTTTAACGAAAAACCACATTTTTACACTAAAAAGTCAATCCTGG
        AGGGAA  TTAA GAAAAG      GGT    TTC                                             
        ||||||  |||| ||||||      |||    |||                                             T
        TTCCTT  GATT CTTTTC      TTT    TGA                                             
ATATTTTT      TT    A      CCGAAC   ----   AACTCAAAATTACTATTCCTGTTTTATTTCCCATTTCACTTATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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