SE3020533

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_670
  • Malus domestica
  • SE3020533
  • Mutator
  • MadM11
  • MDC021463.226:739-900
  • TGTTTAAGG
  • TAAGGGGTGTGCTATCCACACACCCCAAATTACTTCCCACACACCTCTTGTTAATTTCTGTCCGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTT           C               AA       C      CC    G       C  T      -   TTTTTCA
    TAAGGGGTGTG TATCCACACACCCCA  TTACTTC CACACA  TCTT TTAATTT TG CCGTTG ATC       
    ||||||||||| |||||||||||||||  ||||||| ||||||  |||| ||||||| || |||||| |||       A
    GTTCCCCACAC ATAGGTGTGTGGGGT  AATGAAG GTGTGT  AGGA AATTAAA AC GGCAGC TAG       
ATTT           T               AA       A      --    A       A  C      C   CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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