SE3020534

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_671
  • Malus domestica
  • SE3020534
  • Mutator
  • MadM14
  • MDC014213.477:7633-8119
  • TTGGGGAGG
  • GGAGGAAATTGTAGCAATAATCTCTCAAATTTAACCTAATTGGAGCAATGGTCCCTCAACTAAAAATTCATGATTATTGGTCTCTTAACTCTTCAAAACGTGCAACTATAGTCTTTTTTGTCAACTCCATTAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGG                 TAA               CTA                     C                               T      C     AC   A                 CA      CTTTCA       AAGR       C CACACTTGAGGCTGAATCAATGGGCAAATATGGAAAAAAGAAATATGCAAAATTGTAGTAATGATCCATCAATTTTAGCC
    GGAGGAAATTGTAGCAA   TCTCTCAAATTTAAC   ATTGGAGCAATGGTCCCTCAA TAAAAATTCATGATTATTGGTCTCTTAACTC TCAAAA GTGCA  TAT GTCTTTTTTGTCAACTC  TTAGAA      TCAAAAT    CATGTGC A                                                                                
    |||||||||||||||||   |||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||  ||| |||||||||||||||||  ||||||      |||||||    ||||||| |                                                                                A
    TCTCTTTTAACATTGTT   AGGGAGTTTAAATTG   TAACCTCGTTACCAGGGAGTT ATTTTTAAGTACTAGTAACCAGGGAATTGAG AGTTTT CACGT  ATA CAGGAAAAGCGGTTGAG  GGTTTT      AGTTTTA    GTACAAC C                                                                                
GGGA                 --C               AAG                     A                               T      A     CT   C                 AC      -AACAC       CTTA       - TTCCTGGTAACGATGTTAACCCAATTTRAARTCCCAAGTAATGAGGTTAACCCAACTTCAACACCCAGATAAAGAGGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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