SE3050535

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_672
  • Malus domestica
  • SE3050535
  • PIF/harbinger
  • MadP18
  • MDC005342.116:3517-3893
  • TAA
  • AGAGCATCTCCAATAGAGATGTCAAAAGATAAATGTTAAATGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G         TA           AG    A   TA       ATTTAATGG   ACGTGACAATGTCAGATTTCCTCTTTTTCCAATTGATATGTTTTTTTGTTATAAATGATTTTTGTATGACCAATTTTAAAAATAAATCAATTAAATTAGCTTTTTAAGATCTATAATTGGTGCATTAATGGG
  AGA CATCTCCAA  GAGATGTCAAA  ATAA TGT  AATGTTA         CTG                                                                                                                                    
  ||| |||||||||  |||||||||||  |||| |||  |||||||         |||                                                                                                                                    A
  TCT GTAGAGGTT  CTCTACAGTTT  TATT ATA  TTACAGT         AGT                                                                                                                                    
AA   G         TA           AG    C   --       ----ACATT   TTAAACTTCCATCCTCGTTCAAAGTTGGTTATACACTTAGGATACACCTAACTGTATACTCAAAAGTATACAGTTTAAACTGTATACTCTTTTACACTACAGTTTAGTAAAAATTAATAAAATAACACACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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