SE3050537

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_674
  • Malus domestica
  • SE3050537
  • PIF/harbinger
  • MadP19
  • MDC005781.213:2291-2662
  • TAA
  • AGACCATCTCCAAAGAAAATGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C   C         A        TTATAAAAGTTA   TACAATTGATGACTGATGTGGCAATCTGAAGTCTTATGTCAAATTTTGTACTTCTCAAACCAAATTGTCAAATATTATTTTATTATTTAAATAGAACGTTAAATGATTGTAATTATTAAAAAACTATTGAAACAAAATTTTTATTGGT
  AGA CAT TCCAAAGAA ATGTCAAA            AAT                                                                                                                                                    
  ||| ||| ||||||||| ||||||||            |||                                                                                                                                                    T
  TCT GTA AGGTTTCTT TACAGTTT            AGG                                                                                                                                                    
AA   C   T         C        -----------T   ATCTACCTTACGGTGACATGTATAAACTGTAGTTTTTAGAGAGGTTGACTTTACAATAAACGACTGACCTAAACTTTCGAATCACTAAACTACAGTTTAAATAAAAATTAAGTAAAATTATCATCCAGGGAATAAGGTGATTGTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3