Plant MITE

SE3020541

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_678
Malus domestica
SE3020541
Mutator
MadM53
MDC018273.360:221-437
CTCACGTTC
ACGTTCGGACCAGGATCCTCTCTTGAGCTAAGGATGAGGATCCTTCTCATCAAGGGATGTGGACTGTTAGATGAAAATCCAATTACTACAA

Secondary structure and sequence

TSD TIR

5'

3'

CTC    -TC                                    C          -G  A     A      GA            TAC     TTATTATAATTTTA    AA
   ACGT   GGACCAGGATCCTCTCTTGAGCTAAGGATGAGGATC TTCTCATCAA  GG TGTGG CTGTTA  TGAAAATCCAAT   TACAA              AAGG  
   ||||   |||||||||||||||||||||||||||||||||||| ||||||||||  || ||||| ||||||  ||||||||||||   |||||              ||||  T
   TGCA   CCTGGTCCTAGGAGAGGACTCGATTCCTACTCCTAG AGGAGTAGTT  CC ACACC GGCAAT  ACTTTTAGGTTG   ATGTT              TTCC  
 CT    CTC                                    A          AA  -     C      AA            CCA     ------------TG    CC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020541

CTCACGTTCGGACCAGGATCCTCTCTTGAGCTAAGGATGAGGATCCTTCTCATCAAGGGATGTGGACTGTTAGATGAAAATCCAATTACTACAATTATTATAATTTTAAAGGAATCCCCTTGTTTGTAACCGTTGGATTTTCAAATAACGGCCCACACCAATTGATGAGGAAGATCCTCATCCTTAGCTCAGGAGAGGATCCTGGTCCCTCACGTTC

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