SE3020542

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_679
  • Malus domestica
  • SE3020542
  • Mutator
  • MadM43
  • MDC017641.109:17172-17403
  • TTATTCAAA
  • AAGGAGGCAGATTCTCTGCCCTCCCATTTGCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTCA                           -----        ----   TTTTGTGTGGTCACGGTTAAGYCAYGTCAACATTTTATATWTTTTTTTATAGAGATAATAAGACAA
       AAGGAGGCAGATTCTCTGCCCTCCCAT     TTGCCCTC    CTG                                                                  
       |||||||||||||||||||||||||||     ||||||||    |||                                                                  A
       TTCCTCCGTCTAAGAGACGGGAGGGTG     AACGGGAG    CGG                                                                  
CAACTTA                           AAGGG        AGTA   GAGAGCACGGGAAGATAAACAGACCAGTGCCAATTCAGTGCAGTTGTAAAATATAATGATAAGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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