Plant MITE

SE3050544

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_681
Malus domestica
SE3050544
PIF/harbinger
MadP7
MDC015856.330:7763-8002
TTA
AGAGCTCGTTTGGATGTGTTTTTAAAATGA

Secondary structure and sequence

TSD TIR

5'

3'

TT  A            G  T           -------------------------------------        ATTTTCGGTGAAAATGTTTTTAGAACCAATTCTTAGTAAAAATGCAAGTAAATCCTGGAAA
  AG GCTCGTTTGGAT TG TTTTAAAATGA                                     CTAAAAGC                                                             
  || |||||||||||| || |||||||||||                                     ||||||||                                                             A
  TC CGAGTAAACCTA AC AAAATTTTACT                                     TTTCGTGA                                                             
AT  C            R  Y           YACTTTRGCYAAAATCTCTTTTARAAAAAKCTAAATT        AATTCACGAAAYARGTTKTTRGTGYTTAATACACGAAGAAGGTCCTTCGTGAAAATTCACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050544

TTAGAGCTCGTTTGGATGTGTTTTTAAAATGACTAAAAGCATTTTCGGTGAAAATGTTTTTAGAACCAATTCTTAGTAAAAATGCAAGTAAATCCTGGAAAAACACTTAAAAGTGCTTCCTGGAAGAAGCACATAATTYGTGRTTKTTGRAYAAAGCACTTAAAGTGCTTTTTAAATCKAAAAARATTTTCTCTAAAAYCGRTTTCAYTCATTTTAAAAYCARATCCAAATGAGCCCTTA

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