Plant MITE

SE3020545

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_682
Malus domestica
SE3020545
Mutator
MadM11
MDC013910.358:815-980
TTCCTACTT
GGGGTGTGCTATTCATATATATCACTTTACTTCTCACG

Secondary structure and sequence

TSD TIR

5'

3'

TTCCTACTT        C           A   C       C     CACT    GA      CTATTCATTAATTTTCTTCAAT  AT   ATA
         GGGGTGTG TATTCATATAT TCA TTTACTT TCACG    CCTT  TAATTT                      TC  CCG   
         |||||||| ||||||||||| ||| ||||||| |||||    ||||  ||||||                      ||  |||    
         CCCCACAC ATAGGTGTGTG GGT AAATGAA AGTGT    GGAA  ATTAAA                      AG  GGC   
TTCGTCCTT        T           G   A       A     --AT    AA      ----------------------  CT   AGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020545

TTCCTACTTGGGGTGTGCTATTCATATATATCACTTTACTTCTCACGCACTCCTTGATAATTTCTATTCATTAATTTTCTTCAATTCATCCGATATGACGGTCGAAAATTAAAAAGGTATGTGAAAAGTAAAATGGGGTGTGTGGATATCACACCCCTTCCTGCTT

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