SE3020546

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_683
  • Malus domestica
  • SE3020546
  • Mutator
  • MadM11
  • MDC008107.194:8205-8368
  • TAAAAATAG
  • TAGGGGTGTGATATCCACACACCCTATTTTACTTCTCACACACCCTACTAATTTTCGACCGTCGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAA          A               TT                  --AC       CGA    CG   CGGATGAA
      TAGGGGTGTG TATCCACACACCCTA  TTACTTCTCACACACCCT    TAATTTT   CCGT  GAT        
      |||||||||| |||||||||||||||  ||||||||||||||||||    |||||||   ||||  |||        T
      ATCCCCACAC ATAGGTGTGTGGGGT  AATGAAGAGTGTGTGGGG    ATTAAAG   GGCA  CTA        
ATAAAA          G               TT                  AACA       ATA    -A   AAAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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