SE3020549

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_686
  • Malus domestica
  • SE3020549
  • Mutator
  • MadM56
  • MDC012386.257:6297-6469
  • ATAATCTAA
  • GGTAATGCTAGGRAGACTAAATTTGTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAATCTAA            R                ATAAATKATATGTCATCAATAAGAATAA     TWTATCAACGTGTAAGTAATAAAYCAAT
         GGTAATGCTAGG AGACTAAATTTGTAAA                            GCACG                            
         |||||||||||| ||||||||||||||||                            |||||                             
         TCATTACGATCT TCTGATTTAAACATTT                            TCAAA                            
ATCTAATAC            C                -------------------------GTT     ACYTTTGATTTCCTGTACTTTTAACTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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