SE3020550

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_687
  • Malus domestica
  • SE3020550
  • Mutator
  • MadM12
  • MDC019984.326:1721-1961
  • ACTGAAAAG
  • CT

Secondary structure and sequence

TSD    TIR
5'



3' 
A  GAAA  -          C      A   CC       -               C             C              A         AAA  ATTTCA  ATTTAAAATTTAAAATT
 CT    AG GGAAAAGGAT CTCGTC GAT  CTTTTCT GGGGATTCTAAGGAT TCGTGATTGTGAC GTTCATCGTACATC TGCGGTCAG   TC      AA                 
 ||    || |||||||||| |||||| |||  ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||   ||      ||                 T
 GA    TC CCTTTTCCTA GAGCGG CTA  GAAAAGA TCCCTAGGATTCCTA AGCACTAGCATTG CAAGTAGCATGTAG ACGCTAGTC   AG      CA                 
   AAAG  A          A      C   -A       A               A             A              C         AAA  ------  ATCCATGATAAATATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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