Plant MITE

SE3020551

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_688
Malus domestica
SE3020551
Mutator
MadM26
MDC012729.145:3090-3315
CACAAACAC
GGAATTGGATARGCTTTGGACCTTAGTGTCCGAAGCCTAGGGATCAAATCATTTGGGCCGCTGATTGGTGTGTAA

Secondary structure and sequence

TSD TIR

5'

3'

CACAAACAC          AR                   GA              A        G    --T      T      AAGAAAT  G --   GTTGGTTGTGTGGTGGG
         GGAATTGGAT  GCTTTGGACCTTAGTGTCC  AGCCTAGGGATCAA TCATTTGG CCGC   GATTGG GTGTAA       CA A  GCC                 
         ||||||||||  |||||||||||||||||||  |||||||||||||| |||||||| ||||   |||||| ||||||       || |  |||                  
         CCTTAACCTA  CGAGGTCTGGAATCACAGG  TCGGATCCCTAGTT AGTAGACC GGCG   TTAACT TACGTT       CC A  GGT                 
CACAAACAC          GG                   RS              A        R    TGT      -      ------Y  - GG   AATTGAATAAAAGGACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020551

CACAAACACGGAATTGGATARGCTTTGGACCTTAGTGTCCGAAGCCTAGGGATCAAATCATTTGGGCCGCTGATTGGTGTGTAAAAGAAATCAGAGCCGTTGGTTGTGTGGTGGGCCAGGAAAATAAGTTAATGGGGACCYTTGCATTCAATTTGTGCGGRCCAGATGAATTGATCCCTAGGCTSRGGACACTAAGGTCTGGAGCGGATCCAATTCCCACAAACAC

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