SE3020552

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_689
  • Malus domestica
  • SE3020552
  • Mutator
  • MadM10
  • MDC029265.21:5813-6051
  • GAAAATATG
  • TGGGACAAGGATTGTCTACCCTCTTATTTTTGGTGCCCTTCCATGCCCTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTTAACGTTTTATATTGTTTTTTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAAATA G               AC                     C    C          T                                    -------------      TT    AG
       T GGACAAGGATTGTCT  CCTCTTATTTTTGGTGCCCTT CATG CCTCCTGTTT GTGTGGTCACGGTTAAGCCACGTTAACGTTTTATAT             TGTTTT  TTAT  
       | |||||||||||||||  ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||             ||||||  ||||   
       A CCTGTTCCTAACAGA  GGAGGATAAAAACCATGGGAG GTAC GGAGGACAAA CACACCAGTGCCAATTCGGTGCAGTTGTAAAATATA             ACAGAA  AATA  
GTATAAA G               CA                     A    C          -                                    ATGATAAGTAAAA      -T    GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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