SE3020554

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_691
  • Malus domestica
  • SE3020554
  • Mutator
  • MadM61
  • MDC004916.615:2521-2739
  • TTGTTAATT
  • GTTAATTGGAAAGGGATCCTCTCTGGATCCCTTTCCACCTAATCGACCTAGTCTAGGATCCGAACCGTTAAAATTTGATCAAACGGCTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      -T     G          --T                    G       CTA       AA     A          A   G     A   AGGGTACCCTTTT
  GTTAAT  GGAAA GGATCCTCTC   GGATCCCTTTCCACCTAATC ACCTAGT   GGATCCG  CCGTT AAATTTGATC AAC GCTAC AAG             
  ||||||  ||||| ||||||||||   |||||||||||||||||||| |||||||   |||||||  ||||| |||||||||| ||| ||||| |||              
  TAATTG  CCTTT CCTAGGGGAG   CCTAGGGAAAGGTGGATTAG TGGATCA   CCTAGGC  GGTAA TTTAAACTAG TTG CGATG TCA             
 T      TT     A          RGS                    G       AAC       CC     C          G   A     -   ATAATAGTGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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