Plant MITE

SE3020555

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_692
Malus domestica
SE3020555
Mutator
MadM43
MDC008117.802:6072-6325
TTGAATAAG
AGGGAGGCAGATTGTCTGCCCTCTTGTTTGGGTGTCTTTCCCATCTCCTCCTATTTGTACAGCCATGGTTAAGTCACGTGAACATTTTATATTCTTATTGTTTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTGAATA                                        CC    C  C      -  A A C                G  C   T     TCT   ---         GTCTTATCATC
       AGGGAGGCAGATTGTCTGCCCTCTTGTTTGGGTGTCTTTC  ATCT CT CTATTT GT C G CATGGTTAAGTCACGT AA ATT TATAT   TAT   TGTTTTTTT           
       ||||||||||||||||||||||||||||||||||||||||  |||| || |||||| || | | |||||||||||||||| || ||| |||||   |||   |||||||||            
       TCCCTCCGTCTAACAGATGGGAGGACAAACCCACGGGAAG  TAGG GA GATAAA CA G C GTGCCAATTCGGTGCA TT TAA ATATA   ATA   ATAAAAAAA           
GAATAAG                                        AA    A  A      A  C C A                G  A   T     TAT   TAT         AAAAAATATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020555

TTGAATAAGGGAGGCAGATTGTCTGCCCTCTTGTTTGGGTGTCTTTCCCATCTCCTCCTATTTGTACAGCCATGGTTAAGTCACGTGAACATTTTATATTCTTATTGTTTTTTTGTCTTATCATCTCTATAAAAAAAAAAAAATATATATATATATATATAATATTGACGTGGCTTAACCGTGACCGCACAAAATAGAAGAGGATAAGAAGGGCACCCAAACAGGAGGGTAGACAATCTGCCTCCCTGAATAAG

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