SE3020557

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_694
  • Malus domestica
  • SE3020557
  • Mutator
  • MadM7
  • MDC015893.105:12749-12965
  • GTAAAAGAT
  • ATGGAATTAGATCCTCTCCCGAGCAGGAGATCAAGATCATCCTGACCCATTAACATGAGACATTGGATTTTGATTCAACGGCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAAAAG        A         CC     G     CAA    ATC     C          A A A                ---------------C      AATTATTAT
       ATGGAATT GATCCTCTC  GAGCA GAGAT   GATC   CTGAC CATTAACATG G C TTGGATTTTGATTCAA                GGCTAT         
       |||||||| |||||||||  ||||| |||||   ||||   ||||| |||||||||| | | ||||||||||||||||                ||||||          
       TGCCTTAA CTAGGAGAG  CTCGT CTCTA   CTAG   GACTG GTGATTGTGC C G AACCTAAAACTAGGTT                TCGATA         
TAGGAAA        C         AA     A     ATC    GAA     A          C A C                ATTTATGTTTGTACCC      GATTTTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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