Plant MITE

SE3020558

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_695
Malus domestica
SE3020558
Mutator
MadM5
MDC015580.288:2411-2600
TAGGTTGGT
TGGAGAGATTTTTCAGTGTGAYCGGTACACGGGRTGGTACACCACGTGT

Secondary structure and sequence

TSD TIR

5'

3'

TAGGTTGG             C   -    Y   -T       R          C    CACT   CAAAT  -     T    GTGCTAAA     A
        TGGAGAGATTTTT AGT GTGA CGG  ACACGGG TGGTACACCA GTGT    ATA     TG TGGGA ATGT        AAGTT 
        ||||||||||||| ||| |||| |||  ||||||| |||||||||| ||||    |||     || ||||| ||||        ||||| A
        ACCTCTTTAAAAA TCA CACT GCT  TGTGTTC ACCATGTGGT CACA    TAT     AC ACCCT TACA        TTCAA 
GTGGTTGG             -   A    -   CT       -          A    AAAT   -CCTC  Y     T    ATAAAAAA     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020558

TAGGTTGGTGGAGAGATTTTTCAGTGTGAYCGGTACACGGGRTGGTACACCACGTGTCACTATACAAATTGTGGGATATGTGTGCTAAAAAGTTAATAACTTAAAAAATAACATTTCCCAYCACTCCTATTAAAACACATGGTGTACCACTTGTGTTCTCGTCACAACTAAAAATTTCTCCAGGTTGGTG

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