Plant MITE

SE3030559

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_696
Malus domestica
SE3030559
hAT
Madh16
MDC034539.9:1746-1938
GACGGTAT
GACGGTATTAGAAGTGGCAAATC

Secondary structure and sequence

TSD TIR

5'

3'

   A G  A     A          GACRAA   A                AACTAAG    -A          T   C TTACACTATTACTACTATTA
  G C GT TTAGA GTGGCAAATC      TTG GTTGTTAATGGGTACC       ATTC  TTAGTTTGAT TCA C                    
  | | || ||||| ||||||||||      ||| ||||||||||||||||       ||||  |||||||||| ||| |                    C
  C G CA GATCT CACCGTTTAG      AAC CAACAGTTATTTATGG       TAGG  AATTAAACTA AGT G                    
TA - G  -     C          ---AGA   C                GCAATWG    CA          T   A TATTATATTTKCACTCTAAR

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3030559

GACGGTATTAGAAGTGGCAAATCGACRAATTGAGTTGTTAATGGGTACCAACTAAGATTCATTAGTTTGATTTCACCTTACACTATTACTACTATTACRAATCTCACKTTTATATTATGATGATATCAAATTAAACGGATGWTAACGGGTATTTATTGACAACCCAAAGAGATTTGCCACCTCTAGACGGCAT

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