SE3020561

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_698
  • Malus domestica
  • SE3020561
  • Mutator
  • MadM9
  • MDC006771.197:12116-12356
  • TCATTTGGG
  • GGGAGATAGGATTCTCGCCAGATCCTTTTTGTGAGGATCCCGGGGATCCTTTAATTATGTCATTTCATCGTATATCGTGCGATCAGAAATCATTTTAAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCATTTG               C C      C         G   CC        C    A      CAT                  A    AAA  A   -TAA   -ATAT      AA
       GGGAGATAGGATTCT G CAGATC TTTTTGTGA GAT  CGGGGATC TTTA TTATGT   TTCATCGTATATCGTGCG TCAG   TC TTT    ACT     TATTTA  
       ||||||||||||||| | |||||| ||||||||| |||  |||||||| |||| ||||||   |||||||||||||||||| ||||   || |||    |||     ||||||   
       CTCTCTATCTTAAGA C GTCTAG AAAAACACT CTA  GTCCTTAG AAAT AGTACA   AAGTAGCATATAGCACGT AGTC   AG AAG    TGA     ATAAGT  
GGGCTTA               A A      T         A   AA        A    A      AGC                  C    AAA  -   TCCA   CAAAC      TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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