Plant MITE

SE3020562

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_699
Malus domestica
SE3020562
Mutator
MadM8
MDC005864.305:14933-15114
ATTTCTAAG
AAGGATAATGTTAGAGAGACCAAATTTTTAACTTTTGTAAATCATATGACGTGTTCATTGATAATTGGA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTCT    A         AG       -     TA   ---         C      C    T        ATT   TTATTACT       TGAT
      AAGG TAATGTTAG  AGACCAA ATTTT  ACT   TTTGTAAAT ATATGA GTGT CATTGATA   GGA        TAAGTAT    
      |||| |||||||||  ||||||| |||||  |||   ||||||||| |||||| |||| ||||||||   |||        |||||||     
      TTCC ATTACAATT  TCTGGTT TAAAA  TGG   AAATGTTTG TATACT CACA GTGGTTAT   CCT        ATTCGTG    
AATCTT    C         CA       A     TC   TTT         T      A    -        ---   ------TT       CAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020562

ATTTCTAAGGATAATGTTAGAGAGACCAAATTTTTAACTTTTGTAAATCATATGACGTGTTCATTGATAATTGGATTATTACTTAAGTATTGATTAACGTGCTTATTTCCTATTGGTGACACATCATATTGTTTGTAAATTTGGTCTAAAATATTGGTCTACTTAACATTACCCTTTTCTAA

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