SE3020567

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_704
  • Malus domestica
  • SE3020567
  • Mutator
  • MadM12
  • MDC006222.243:31411-31631
  • GAGATTAGA
  • GGAAAAGGATCCTCGCAAGATCCTTTTCCTAGGGATCCCGTGATCTCATCCGTTCATCGTACATCGTGCGGTCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGATTAGA          CCT  C A    C     C       C CG         CC          C             AAATC    -   AATTTAAAATTTAAA
         GGAAAAGGAT   CG A GATC TTTTC TAGGGAT C  TGATCTCAT  GTTCATCGTA ATCGTGCGGTCAG     ATTT TAA               
         ||||||||||   || | |||| ||||| ||||||| |  |||||||||  |||||||||| |||||||||||||     |||| |||                
         CCTTTTCCTA   GC T CTAG AAAAG ATCCCTA G  ACTAGAGTG  CAAGTAGCAT TAGCACGCCAGTC     TAAT TAT               
AGATTAGAA          -CC  - A    T     A       A TY         AA          A             AAAAA    C   AATAAATATAAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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