SE3020568

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_705
  • Malus domestica
  • SE3020568
  • Mutator
  • MadM58
  • MDC007070.520:9008-9212
  • TTAAATTTT
  • AAATTTTGGAGTATGATTCTCTCCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      -T               -     CCTAATT  TC    C   T   C   ATTATT  - A  GTTACGATTACACCCCGTTTACATTTTTTTTTTTGAAT
  AAATTT  GGAGTATGATTCTCT CCCTT       TC  TCCC TTC ATC CCT      TA A CG                                      
  ||||||  ||||||||||||||| |||||       ||  |||| ||| ||| |||      || | ||                                       
  TTTAAA  CCTCATACTAAGAGA GGGAA       GG  AGGG AAG TAG GGA      GG A AA                                      
 T      TT               A     -AATAAT  TA    A   -   A   ------  A -  TGTGARRAAAAAAAAAACAGCATAAGAGATATWTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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