SE3020576

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_713
  • Malus domestica
  • SE3020576
  • Mutator
  • MadM11
  • MDC003057.337:12045-12209
  • TTTAAAAAA
  • AAAGGGGTATGATATCCACACACCCTATTTTACTTCTCACACATCTTTTTAATTTTTAGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAA        A  A          C            C            -T        A   GTCG    RGATGAA
      AAAGGGGT TG TATCCACACA CCTATTTTACTT TCACACATCTTT  TAATTTTT GTC    GATT       
      |||||||| || |||||||||| |||||||||||| ||||||||||||  |||||||| |||    ||||       T
      TTTCCCCA AC ATAGGTGTGT GGATAAAATGAA AGTGTGTGGGAA  ATTAAAAA CAG    CTAA       
AAAAAA        C  G          A            A            TT        -   GCAA    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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