SE3050577

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_714
  • Malus domestica
  • SE3050577
  • PIF/harbinger
  • MadP6
  • MDC019582.203:797-1075
  • TAA
  • AGGGTGCGTTTGGTACGTGGGACGGGACGGGACGGAACAGGACGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  ----                 A  A        ---------------      GTCCCGCGTTTGGTGCGCCAAAAATGGGTGGAACGGGCTGTTCCACGGGACAGATTTTGAGTGTTTTTGCGTTCC
  AGGGTGCGTTTGGTACGT    GGGACGGGACGGGACGG AC GGACGAGG               CGTTCC                                                                           
  ||||||||||||||||||    ||||||||||||||||| || ||||||||               ||||||                                                                            
  TCCCACGCAAACCATGCG    CCTTGCCCTGCCCTGCC TG CTTGCTTC               TTCTGT                                                                           
AA                  TCTG                 C  C        CACATTAAAAACTTT      ACCCCATATAAACAGAATTTTACCATTTTGTAACGCAAGGTGTTTACACCTTGTTTGGGCAAGGTCCCCCCTCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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