Plant MITE

SE3020578

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_715
Malus domestica
SE3020578
Mutator
MadM64
MDC005280.634:1925-2140
AAATAACTG
TGGAATTGGATCCCTTCCTGAGCAAATGATGGGGATCCTCATGACCACACAACACGGATTGTTGGATTTTGATCCAACAATTAT

Secondary structure and sequence

TSD TIR

5'

3'

AAATAAC            C               A                         C                  ------CCA        --AAAACAAG   TC
       TGGAATTGGATC CTTCCTGAGCAAATG TGGGGATCCTCATGACCACACAACA GGATTGTTGGATTTTGAT         ACAATTAT          GGA  
       |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||         ||||||||          |||   
       ACCTTAACCTAG GAAGGATTCGTTTAC ACCCCTAGGAGTACTGGTGTGTTGT CCTGACAACTTAAAACTA         TGTTAATA          TCT  
TCAATAA            T               C                         A                  TATTGCCAA        ATATTAAAAA   TC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020578

AAATAACTGGAATTGGATCCCTTCCTGAGCAAATGATGGGGATCCTCATGACCACACAACACGGATTGTTGGATTTTGATCCAACAATTATAAAACAAGGGATCCTTCTAAAAATTATAATAATTGTAACCGTTATATCAAAATTCAACAGTCCATGTTGTGTGGTCATGAGGATCCCCACCATTTGCTTAGGAAGTGATCCAATTCCAAATAACT

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