SE3050579

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_716
  • Malus domestica
  • SE3050579
  • PIF/harbinger
  • MadP20
  • MDC020143.45:8530-8915
  • TAA
  • AGACCATCTCCAACTCTGGGCTAAAAGCCAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -                 --ACCC   --AAACACT    AACCCATGCTAAAATTTTAGGCTAAATGCCAAATGCTATTTCTGGGCCAAATACCCCCAGCTTTCCCCCCGGGCTAAATGCGAAATGTTTATCGGAATTTAAATTTTTTTAGATTAAAATGTTCATAAAATTAATT
  AGACCATCTCCAACTCT GGGCTAAAAGCCAAATT      CCC         CTCC                                                                                                                                        
  ||||||||||||||||| |||||||||||||||||      |||         ||||                                                                                                                                        T
  TCTGGTAGAGGTTGGGA CCCGATTTTCGGTTTAA      GGG         TCGA                                                                                                                                        
AA                 A                 AAAATC   CCTTTTAAA    AAATCGGGTCTTTGTAGAAAAGACGAGGTTGGGAAGATGGGATTTTAAAATCGGGCCTTAATAATTTCTTACTTTAATCGGATTTAAAAAAAGAATTTAGTTAAAAATAATTTTTTTATTTATACATCTAATAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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