Plant MITE

SE3020582

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_719
Malus domestica
SE3020582
Mutator
MadM12
MDC014188.335:10759-10993
CCTCAATCA
GGACCAGGATCCTCGCCAGATCCATTCCCTAGGGATGATCCCACAATCATGTCCGTTCATCGTATATCGTGTGGTCAGAAATC

Secondary structure and sequence

TSD TIR

5'

3'

CCTCAATCA  -               A                  ------     CA    CA           C                 AAA  ATTTA   TTTAAATTTTAAAA
         GG ACCAGGATCCTCGCC GATCCATTCCCTAGGGAT      GATCC  CAAT  TGTCCGTTCAT GTATATCGTGTGGTCAG   TC     AAT              
         || ||||||||||||||| ||||||||||||||||||      |||||  ||||  ||||||||||| |||||||||||||||||   ||     |||              T
         CC TGGTCCTAGGAGCGG CTAGGTAAGGGATCTCTA      CTAGG  GTTA  ATAGGCAAGTA CATATAGCACGCCAGTC   AG     CAT              
 ACTAACTC  G               C                  GAATCC     AC    AG           A                 AAA  CAATC   AATAAATGAAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020582

CCTCAATCAGGACCAGGATCCTCGCCAGATCCATTCCCTAGGGATGATCCCACAATCATGTCCGTTCATCGTATATCGTGTGGTCAGAAATCATTTAAATTTTAAATTTTAAAATTCAAAAGTAAATAATACCTAACGAAAACTGACCGCACGATATACAATGAACGGATAGAATTGCAGGATCCCTAAGATCTCTAGGGAATGGATCCGGCGAGGATCCTGGTGCCCTCAATCA

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