Plant MITE

SE3020586

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_723
Malus domestica
SE3020586
Mutator
MadM8
MDC002551.280:9429-9617
TTCACAATT
GGATAATGCTAGGAACATTAAA

Secondary structure and sequence

TSD TIR

5'

3'

TTCACAATT  A     C      C      ACTTTAAACCAAAA      ATCAAATGATGTGTCACCAACAGAAAATAAGCAAGTTAATCAACACT
         GG TAATG TAGGAA ATTAAA              TGACAT                                               
         || ||||| |||||| ||||||              ||||||                                               T
         CC ATTAC ATCCTT TAATTT              TTAATT                                               
TTAACGCTT  C     A      C      --------WAARAT      TAAAATAATTGGCTTACTACAACTACAACTACTAACTTAATAATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020586

TTCACAATTGGATAATGCTAGGAACATTAAAACTTTAAACCAAAATGACATATCAAATGATGTGTCACCAACAGAAAATAAGCAAGTTAATCAACACTTAAGTAATAATTCAATCATCAACATCAACATCATTCGGTTAATAAAATTTAATTTARAAWTTTAATCTTCCTAACATTACCCTTCGCAATT

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