Plant MITE

SE3020596

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_733
Malus domestica
SE3020596
Mutator
MadM4
MDC038846.5:1750-1925
ATCTCTCAA
GAGTAATGCTAYGGAAACTAAATTTGTAAACTAAATTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

ATCTCTCAA           Y   AAC                  TT   TAACTAA    CATAAAAGTTGATGATTGAATTATTACTT
         GAGTAATGCTA GGA   TAAATTTGTAAACTAAAT  TGT       ATGA                             
         ||||||||||| |||   ||||||||||||||||||  |||       ||||                             A
         CTCATTACGAT CCT   ATTTAAACGTTTGATTTA  ACA       ATGG                             
AACTCTCTA           C   CTA                  CT   -----TA    TTATCCATTACTCGTGRAAAMAGTTACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020596

ATCTCTCAAGAGTAATGCTAYGGAAACTAAATTTGTAAACTAAATTTTGTTAACTAAATGACATAAAAGTTGATGATTGAATTATTACTTAAACATTGAMAAARGTGCTCATTACCTATTGGTAATACATCATTTAGTTTGCAAATTTAATCTCCCTAGCATTACTCATCTCTCAA

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