Plant MITE

SE3020598

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_735
Malus domestica
SE3020598
Mutator
MadM10
MDC004749.247:6385-6581
CTTTACAAG
AAGGGAGTAGGATTCTCTCCCTTTTTTTTTCCTTTCCTTCTCTCATCTCC

Secondary structure and sequence

TSD TIR

5'

3'

CTTTAC      G         CTC             T   -          C         AAC    ACGGTTAAGCCATGTAAATATCTTATATTA
      AAGGGA TAGGATTCT   CCTTTTTTTTTCC TTC CTTCTCTCAT TCCTATTTG   GGTT                              
      |||||| |||||||||   ||||||||||||| ||| |||||||||| |||||||||   ||||                              A
      TTCCCT ATCCTAAGA   GGGAGGAAAAAGG AGG GAAGGGAGTA AGGAGAGTG   TAAG                              
GAACAT      G         AAT             T   C          Y         ---    AGATAAAACAGAAAGAAAAAGTTATATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020598

CTTTACAAGGGAGTAGGATTCTCTCCCTTTTTTTTTCCTTTCCTTCTCTCATCTCCTATTTGAACGGTTACGGTTAAGCCATGTAAATATCTTATATTAATTTTATATTGAAAAAGAAAGACAAAATAGAGAATGTGAGAGGAYATGAGGGAAGCGGATGGAAAAAGGAGGGTAAAGAATCCTAGTCCCTTTACAAG

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