SE3020599

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_736
  • Malus domestica
  • SE3020599
  • Mutator
  • MadM12
  • MDC008544.465:11700-11931
  • CTTTTGTTG
  • GGGAAAAGGATCCTTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTTGTT                 CGA   CTTTTTCTAGGGATCTTAGGGATCTCATGATCGTGATCATTCATCGTARATCGTGCGGTCAGTTTTCGTTAGGTACTATTTATATT
        GGGAAAAGGATCCTTGC   ATC                                                                                      
        |||||||||||||||||   |||                                                                                       
        TCCTTTTCCTAGGAACG   CCT                                                                                      
GTTGTTTT                 --A   AGTAAAAGGKTCCCTAGAGCACTAGTACTGGCAAGTAGTATGTAGTACGCCAGTTTTTAGTAAAGTTTTAAATTTAAAATTTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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