SE3020600

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_737
  • Malus domestica
  • SE3020600
  • Mutator
  • MadM12
  • MDC010627.222:1622-1844
  • ACATTTAAC
  • GAACCAGGATCCTCTCCTGAGCAATTCCCTAGGGATCCTGCAATCATGTCCGTTCATCGTATATCGTGCGGTCAGAAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
ACATTTAAC                     C                       A    C      CG         C      AAA  ---------A     AATTTAAATTTT
         GAACCAGGATCCTCTCCTGAG AATTCCCTAGGGATCCTGCAATC TGTC GTTCAT  TATATCGTG GGTCAG   TC          TTTAA            
         ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||  ||||||||| ||||||   ||          |||||             
         CTTGGTCCTAGGAGAGGATTC TTAAGGGATCCCTAGGGCGTTAG ACAG CAAGTA  ATATAGCAC CCAGTC   AG          TAAGT            
CAATTTGCA                     A                       A    A      AA         T      AAA  CAATCCATGA     ATAAACTTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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