SE3020602

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_739
  • Malus domestica
  • SE3020602
  • Mutator
  • MadM19
  • MDC011012.138:25658-25874
  • GAAGAAAGG
  • GGATCAGGATCCTCTCCTGAGCTAAGGGTGAGGATCCTCATGAGCAAGCTTATCGGGTCATTGAAATTTTATACAAMGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAGAAAGG          C    CC                      A             C     A            A   M     CAATTATTATAACTTT      G
         GGATCAGGAT CTCT  TGAGCTAAGGGTGAGGATCCTC TGAGCAAGCTTAT GGGTC TTGAAATTTTAT CAA GGTTA                TAGAGG 
         |||||||||| ||||  |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| ||| |||||                |||||| A
         CCTAGTCCTA GAGA  ACTCGATTCCCATTCCTAGGAG ACTCGTTCGGGTA CCTGG AACTTTAAAATA GTT CCAAT                GTCTCC 
GGAAAGAAG          A    AT                      G             A     C            A   G     ------------ATTT      C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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