SE3020608

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_745
  • Malus domestica
  • SE3020608
  • Mutator
  • MadM7
  • MDC007637.477:4163-4379
  • CAAAAGCAG
  • GGGATTAGGATCCTCTCTTGAGCAAAGGCTGATGATCCTCTTGATTAAGCCCATCAGGCCGTTGAAATTTTATCCAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAAGCA                            C   T                     CA                           --------------AAAAC   AA
        GGGATTAGGATCCTCTCTTGAGCAAAGG TGA GATCCTCTTGATTAAGCCCAT  GGCCGTTGAAATTTTATCCAACGGCTA                   AGG  
        |||||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||                   |||  G
        CCCTAGTCCTAGGAGAGGACTCGTTTCC ACT CTAGGAGGACTGGTTCGGGTA  CCGGCAATTTTAAAATAGGTTGCCGAT                   TCC  
GACGAAAA                            T   T                     TC                           GTTAATAATATTGAAAATC   CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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