SE3020610

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_747
  • Malus domestica
  • SE3020610
  • Mutator
  • MadM20
  • MDC019843.198:3310-3525
  • CATAGGAAC
  • GGATTTGGATCCTCTCCCGAGCTAATGGAGAGGATCCTCCTGACCAAGTGTTATAGACGTTGGATTTTTATCCAATGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CATAGGAAC          C      C                                    A   -                       CAAAC   TGGGTCCTTTT
         GGATTTGGAT CTCTCC GAGCTAATGGAGAGGATCCTCCTGACCAAGTGTTAT GAC GTTGGATTTTTATCCAATGGCTA     AGG           
         |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||     |||           A
         CCTAAACCTA GAGAGG CTCGATTACCTCTCCTAGGAGGACTGGTTCACAATA CTG CAACCTAAAAGTAGGTTGCCGAT     TTA           
CAAGGATAC          T      A                                    C   G                       ----A   ATATAATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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