SE3020615

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_752
  • Malus domestica
  • SE3020615
  • Mutator
  • MadM41
  • MDC026074.80:9152-9367
  • CTCAAAGAA
  • GAAGGACTTGGATCCTCTCCTGAGCTAATGAAGAGGATCATCCTGACCACTAATCATGGGCCGTTGGATTTTTATCCAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCAAA  A   C                      GA        A                                             ------------CAAAC    GG
      GA GGA TTGGATCCTCTCCTGAGCTAAT  AGAGGATC TCCTGACCACTAATCATGGGCCGTTGGATTTTTATCCAACGGCTA                 AAGG  
      || ||| ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||                 ||||   
      CT CCT AACCTAGGAGAGGACTCGATTA  TCTCCTAG AGGACTGGTGATTAGTACCTGGCAACCTAAAAATAGGTTGCTGAT                 TTCC  
AAGAAA  C   A                      AC        G                                             ATTAATAATATTMAAAT    CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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