Plant MITE

SE3020617

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_754
Malus domestica
SE3020617
Mutator
MadM9
MDC001881.68:3279-3519
CTAGTGAAG
AGGAGAGAGAATCATTGCCAGATCCACTTTGTGAAGATCTCGRGGATCCTCCAATCACATCCGTTCATCGTATATCGTGCGGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

CTAGTGA     A   A   A    CA     A        A    TC R        C        C       C             C   --TTTTCGT     ---AC      TATTC
       AGGAG GAG ATC TTGC  GATCC CTTTGTGA GATC  G GGATCCTC AATCACAT CGTTCAT GTATATCGTGCGG CAG         TAAGT     TGTTTA     
       ||||| ||| ||| ||||  ||||| |||||||| ||||  | |||||||| |||||||| ||||||| ||||||||||||| |||         |||||     ||||||      
       TCCTC CTC TAG AACG  CTAGG GAAACACT CTAG  C TCTAGGAG TTAGTGTA GTAAGTA CATGTAGCACGTT GTC         ATTTA     ATAAAT     
GAAGTGA     A   C   A    AC     A        C    TA C        T        T       A             A   TTTAATAAC     AAAAA      TTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020617

CTAGTGAAGGAGAGAGAATCATTGCCAGATCCACTTTGTGAAGATCTCGRGGATCCTCCAATCACATCCGTTCATCGTATATCGTGCGGCCAGTTTTCGTTAAGTACTGTTTATATTCAATTTTAAATAAAAAAATTTACAATAATTTCTGATTGCACGATGTACAATGAATGTATGTGATTTGAGGATCTCCATGATCCTCACAAAGAGGATCCAGCAAAGATCCTCACTCCTAGTGAAG

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