SE3020619

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_756
  • Malus domestica
  • SE3020619
  • Mutator
  • MadM19
  • MDC003545.431:6988-7207
  • CTTTAAAAT
  • TTTAAAATGGATCAGGATCCTCTCCTGAGGTAAGGGTGAGGATCCTCCTGAGTAAGCTCATCGGGCCATTCAAATTTTTATCCAACGGGTTTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 C      AT                     G                   G        C        A  C       T      C  GT      TTATTWKAACTTTT
  TTTAAA  GGATCAGGATCCTCTCCTGAG TAAGGGTGAGGATCCTCCT AGTAAGCT ATCGGGCC TT AAATTTT ATCCAA GG  TTACAA              
  ||||||  ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| || ||||||| |||||| ||  ||||||              A
  AAATTT  CCTAGTCCTAGGAGAGGATTC ATTCCCACTCCTAGGAGGA TCGTTCGG TAGTCTGG AA TTTAAAA TAGGTT CT  GATGTT              
TA      -C                     G                   A        T        C  A       -      A  --      TGTCTCTCARATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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