SE3030623

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_760
  • Malus domestica
  • SE3030623
  • hAT
  • Madh17
  • MDC015795.170:8698-9119
  • TACTTTGC
  • TAC

Secondary structure and sequence

TSD    TIR
5'



3' 
         -TT   CACTAGCAGAGCCACGGTAAGGGCTACCCTGGGCTATAGCCCAGGTAGCTAGTGAAAAATAAAATTTTACATGTAAATTTAATTGATTTTTTAATGTAGCCCACCATATATTTAGTCATTAATCCGAATTCTCACAGTTTAATTATATAAAATTATATAATACAATTTACAAATCATCTCTTCTTCTTACATCCTTTTT
      TAC   TGC                                                                                                                                                                                                       
      |||   |||                                                                                                                                                                                                       C
      ATG   CCG                                                                                                                                                                                                       
CGTTTC   TTA   CCTCGATCCTTAAAAAGTGGCCCACCCGATCGAATTTCTAAATTTTAGAAATATTTGTTTCTTTGAACTATGATATAAAAAGTGTCATAGTCGATCGAATTCTTTTAAAAGTTTTCTACTCGGTTCTTAAAAGCAATAATTTATTTATGCACGATTTTAAGTTTGTTTAAGTTTGTATATGTAAATGTTCTTCACTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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